The Anti-Microbial Resistance Prediction Challenge
Jul 16, 2024 · This gives you wide exposure and further opportunities for interaction with colleagues without separate registration fees. You just register with one of multiple options at …
MetaSUB Forensics Challenge @CAMDA ISMB Chicago
Jan 27, 2025 · The MetaSUB International Consortium (metasub.org) is building a longitudinal metagenomic map of mass-transit systems and other public spaces across the globe. The …
Bismark - A New Tool for Mapping and Analysis of Bisulfite-Seq Data
Jun 14, 2010 · Bismark at ISMB I will also be presenting Bismark with a poster at ISMB in Boston soon (July 11-13) where I am happy to answer any questions. Last edited by fkrueger; 05-12 …
RepeatMasker & RepeatScout - SEQanswers
Sep 29, 2012 · Here's an example of a run I did successfully. I never got RepeatModeler working, and the installation of the standalone Blast program RMblast was a bit tricky. Make sure TRF …
Oxford Nanopore ‘Wiggle Space’ Challenge - SEQanswers
Jan 10, 2017 · The Call for Contributions to CAMDA @ISMB/ECCB is now open! Several gut microbiota samples had their DNA sequenced both by Nanopore long read next-next …
Pindel: improved version for indels and structural variants
May 4, 2010 · Pindel can detect variants of any sizes as long as they are not inter-chromosome events. The only thing I worry about is speed. The runtime is linear to the maximum size of …
Seeking statistics on genomic data - SEQanswers
Jul 3, 2011 · Hi all. I'm wondering if any studies have been done on the statistics of human genomic data. In particular, on the distribution of bases and k-mers in human dna. For …
Bioinformatics - SEQanswers
Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc